Publications

Modeling of a Cell-Free Synthetic System for Biohydrogen Production

Published: March 30, 2015

Authors: Nicolas Fontaine, Brigitte Grondin-Perez, Frederic Cadet, Bernard Offmann 

Journal: Journal of Computer Science & Systems Biology

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Use of a structural alphabet to find compatible folds for amino acid sequences

Analysis of loop boundaries using different local structure assignment methods

Protein short loop prediction in terms of a structural alphabet

Published: June 25, 2009

Authors: Manoj Tyagi, Aurélie Bornot, Bernard Offmann, Alexandre G. de Brevern

Journal: Computational Biology and Chemistry

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PEACCEL’s founders publications

Converting bulk sugars into prebiotics: semi-rational design of a transglucosylase with controlled selectivity

DoSA: Database of Structural Alignments

Correlation between local structural dynamics of proteins inferred from NMR ensembles and evolutionary dynamics of homologues of known structure

Published: June 3, 2013

Authors: Swapnil Mahajan, Alexandre G. de Brevern, Bernard Offmann, Narayanaswamy Srinivasan

Journal: Journal of Biomolecular Structure and Dynamics

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A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications

Published: August 7, 2006

Authors: Manoj Tyagi, Venkataraman S. Gowri, Narayanaswamy Srinivasan, Alexandre G. de Brevern, Bernard Offmann

Journal: Proteins: Structure, Function, and Bioinformatics

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Native and modeled disulfide bonds in proteins: Knowledge-based approaches toward structure prediction of disulfide-rich polypeptides