A machine learning approach for reliable prediction of amino acid interactions and its application in the directed evolution of enantioselective enzymes
Published: November 13, 2018
Journal: Scientific Reports
Application of fourier transform and proteochemometrics principles to protein engineering
Published: October 16, 2018
Authors: Frédéric Cadet, Nicolas Fontaine, Iyanar Vetrivel, Matthieu Ng Fuk Chong, Olivier Savriama, Xavier Cadet, Philippe Charton
Journal: BMC Bioinformatics
Knowledge-based prediction of protein backbone conformation using a structural alphabet
Published: November 21, 2017
Authors: Iyanar Vetrivel, Swapnil Mahajan, Manoj Tyagi, Lionel Hoffmann, Yves-Henri Sanejouand, Narayanaswamy Srinivasan, Alexandre G. de Brevern, Frédéric Cadet, Bernard Offmann
Journal: PLoS One
Modeling of a Cell-Free Synthetic System for Biohydrogen Production
Published: March 30, 2015
Authors: Nicolas Fontaine, Brigitte Grondin-Perez, Frederic Cadet, Bernard Offmann
Journal: Journal of Computer Science & Systems Biology
Use of a structural alphabet to find compatible folds for amino acid sequences
Published: October 25, 2014
Authors: Swapnil Mahajan, Alexandre G. de Brevern, Yves-Henri Sanejouand, Narayanaswamy Srinivasan, Bernard Offmann
Journal: Protein Science
Analysis of loop boundaries using different local structure assignment methods
Published: July 15, 2009
Authors: Manoj Tyagi, Aurélie Bornot, Bernard Offmann, Alexandre G. de Brevern
Journal: Protein Science
Protein short loop prediction in terms of a structural alphabet
Published: June 25, 2009
Authors: Manoj Tyagi, Aurélie Bornot, Bernard Offmann, Alexandre G. de Brevern
Journal: Computational Biology and Chemistry
PEACCEL’s founders publications
Converting bulk sugars into prebiotics: semi-rational design of a transglucosylase with controlled selectivity
Published: February 3, 2016
Authors: Tom Verhaeghe, Karel De Winter, Magali Berland, Rob De Vreese, Matthias D’hooghe, Bernard Offmann, Tom Desmet
Journal: Chemical Communications
DoSA: Database of Structural Alignments
Published: July 11, 2013
Authors: Swapnil Mahajan, Garima Agarwal, Mohammed Iftekhar, Bernard Offmann, Alexandre G. de Brevern, Narayanaswamy Srinivasan
Journal: Journal of Biomolecular Structure and Dynamics
Correlation between local structural dynamics of proteins inferred from NMR ensembles and evolutionary dynamics of homologues of known structure
Published: June 3, 2013
Authors: Swapnil Mahajan, Alexandre G. de Brevern, Bernard Offmann, Narayanaswamy Srinivasan
Journal: Journal of Biomolecular Structure and Dynamics
A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications
Published: August 7, 2006
Authors: Manoj Tyagi, Venkataraman S. Gowri, Narayanaswamy Srinivasan, Alexandre G. de Brevern, Bernard Offmann
Journal: Proteins: Structure, Function, and Bioinformatics
Native and modeled disulfide bonds in proteins: Knowledge-based approaches toward structure prediction of disulfide-rich polypeptides
Published: January 11, 2005
Authors: Ratna Rajesh Thangudu, Arunachalam Vinayagam, Ganesan Pugalenthi, Arunachalam Manonmani, Bernard Offmann, Ramanathan Sowdhamini
Journal: Proteins: Structure, Function, and Bioinformatics