Protein Engineering

Published: 02/12/2022

Authors: F. Cadet et al

Journal: Front. Mol. Biosci

Published: 04/11/2022

Authors: Wittmund M. , Cadet F., Davari M

Journal: ACS Catalysis

Published: 22/06/2022

Authors: X. F. Cadet, JC Gelly, A. van Noord, F. Cadet, C. G. Acevedo-Rocha

Journal: Methods in Molecular Biology (Springer)

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Published: 02/03/2021

Authors: Guangyue Li Youcai Qin, Nicolas T. Fontaine, Matthieu Ng Fuk Chong, Miguel Angel Maria-Solano, Ferran Feixas, Xavier F. Cadet, Rudy Pandjaitan, Marc Garcia-Borràs, Frederic Cadet, Manfred T. Reetz

Journal: ChemBioChem

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Published: 11/11/2019

Authors: Nicolas T. Fontaine, Xavier F. Cadet, Iyanar Vetrivel

Journal: International Journal of Molecular Sciences

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Published: 14/09/2019

Authors: Raluca Ostafe, Nicolas Fontaine, David Frank, Matthieu Ng Fuk Chong, Radivoje Prodanovic, Rudy Pandjaitan, Bernard Offman, Frédéric Cadet, Rainer Fischer

Journal: Biotechnology & Bioengineering

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Published: 13/11/2018

Authors: Frédéric Cadet, Nicolas Fontaine, Guangyue Li, Joaquin Sanchis, Matthieu Ng Fuk Chong, Rudy Pandjaitan, Iyanar Vetrivel, Bernard Offmann, Manfred T. Reetz

Journal: Scientific Reports

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Published: 16/10/2018

Authors: Frédéric Cadet, Nicolas Fontaine, Iyanar Vetrivel, Matthieu Ng Fuk Chong, Olivier Savriama, Xavier Cadet, Philippe Charton

Journal: BMC Bioinformatics

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Quantum Computing

Published: 06/02/2024

Authors: Shengxin Zhuang, John Tanner, Yusen Wu, Du Duyhn, Wei Du, Xavier F. Cadet, Nicolas Fontaine, Philippe Charton, Cedric Damour, Frederic Cadet, Jingbo Wang

Journal: arxiv

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AntiMicrobial Peptides (AMPs)

Published: 17/01/2024

Authors: Garcıa-Cruz JC, Rebollar-Juarez X, Limones-Martinez A, Santos-Lopez CS, Toya S, Maeda T, Ceapa ̆CD, Blasco L, Toma ́S M, D ́ıaz-Vela ́ squez CE, Vaca-Paniagua F, D ́ıaz-Guerrero M, Cazares D, Cazares A, Herna ́ ndez-Dura ́ n M, Lo ́ pez-Ja ́ come LE, Franco-Cendejas R, Husain FM, Khan A, Arshad M, Morales-Espinosa R, Ferna ́ ndez-Presas AM, Cadet F, Wood TK and Garc ́ıa-Contreras R

Journal: Front. Cell. Infect. Microbiol

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Published: 12/10/2023

Authors: Katya Dafne Guadarrama-Orozco, Caleb Perez-Gonzalez, Kokila Kota, Miguel Cocotl-Yañez, Jesús Guillermo Jiménez-Cortés, Miguel Díaz-Guerrero, Mariel Hernández-Garnica, Julia Munson, Frederic Cadet, Luis Esaú López-Jácome, Ángel Yahir Estrada-Velasco, Ana María Fernández-Presas, Rodolfo García-Contreras

Journal: FEMS Microbiology Ecology

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Protein Science

Published: 22/07/2020

Authors: Rajas Rao, Julien Diharce, Bérénice Dugué, Mariano A. Ostuni, Frédéric Cadet, Catherine Etchebest

Journal: Journal of Chemical Information and Modeling

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Published: 24/09/2019

Authors: Iyanar Vetrivel, Alexandre G. de Brevern, Frédéric Cadet, Narayanaswamy Srinivasan, Bernard Offmann

Journal: Biochimie

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Published: 31/08/2019

Authors: Xavier F. Cadet, Reda Dehak, Sang Peter Chin, Miloud Bessafi

Journal: Entropy

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Published: 21/11/2017

Authors: Iyanar Vetrivel, Swapnil Mahajan, Manoj Tyagi, Lionel Hoffmann, Yves-Henri Sanejouand, Narayanaswamy Srinivasan, Alexandre G. de Brevern, Frédéric Cadet, Bernard Offmann

Journal: PLoS One

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Published: 25/10/2014

Authors: Swapnil Mahajan, Alexandre G. de Brevern, Yves-Henri Sanejouand, Narayanaswamy Srinivasan, Bernard Offmann

Journal: Protein Science

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Published: 15/07/2009

Authors: Manoj Tyagi, Aurélie Bornot, Bernard Offmann, Alexandre G. de Brevern

Journal: Protein Science

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Published: 25/06/2009

Authors: Manoj Tyagi, Aurélie Bornot, Bernard Offmann, Alexandre G. de Brevern

Journal: Computational Biology and Chemistry

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Synthetic Biology

Published: 10/06/2022

Authors: Ophélie Lo-Thong-Viramoutou, Philippe Charton, Xavier F. Cadet, Brigitte Grondin-Perez, Emma Saavedra, Cédric Damour, Frédéric Cadet

Journal: Frontiers in Artificial Intelligence

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Published: 10/08/2020

Authors: Ophélie Lo-Thong, Philippe Charton, Xavier F. Cadet, Brigitte Grondin-Perez, Emma Saavedra, Cédric Damour, Frédéric Cadet

Journal: Scientific Reports

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Published: 28/01/2020

Authors: Anamya Ajjolli Nagaraja , Philippe Charton, Xavier F. Cadet, Nicolas Fontaine, Mathieu Delsaut, Birgit Wiltschi, Alena Voit, Bernard Offmann, Cedric Damour, Brigitte Grondin-Perez, Frederic Cadet

Journal: Catalysts

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Published: 08/05/2019

Authors: Anamya Ajjolli Nagaraja, Nicolas Fontaine, Mathieu Delsaut, Philippe Charton, Cedric Damour, Bernard Offmann, Brigitte Grondin-Perez, Frederic Cadet

Journal: PLoS One

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Published: 30/03/2015

Authors: Nicolas Fontaine, Brigitte Grondin-Perez, Frederic Cadet, Bernard Offmann

Journal: Journal of Computer Science & Systems Biology

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Antibodies

Published: 08/02/2023

Authors: Aravindan Arun Nadaradjane, Julien Diharce, Joseph Rebehmed, Frédéric Cadet, Fabrice Gardebien, Jean-Christophe Gelly, Catherine Etchebest & Alexandre G. de Brever

Journal: Journal of Biomolecular Structure and Dynamics

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Published: 28/03/2022

Authors: Vishwakarma, P.; Vattekatte, A.M.; Shinada, N.; Diharce, J.; Martins, C.; Cadet, F.; Gardebien, F.; Etchebest, C.; Nadaradjane, A.A.; de Brevern, A.G

Journal: International Journal of Molecular Sciences

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Published: 06/03/2021

Authors: Akhila Melarkode Vattekatte, Nicolas Ken Shinada, Tarun J. Narwani, Floriane Noël, Olivier Bertrand, Jean-Philippe Meyniel, Alain Malpertuy, Jean-Christophe Gelly, Frédéric Cadet, Alexandre G. de Brevern

Journal: PeerJ

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Physico-chemical characterization

Published: 16/12/2019

Authors: Xavier F. Cadet, Ophélie Lo-Thong, Sylvie Bureau, Reda Dehak, Miloud Bessafi

Journal: Scientific Reports

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PEACCEL’s founders publications

Published: 22/02/2023

Authors: Demonceaux et al.

Journal: Organic & Biomolecular Chemistry

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Published: 09/09/2021

Authors: Akhila Melarkode Vattekatte, Frédéric Cadet, Jean-Christophe Gelly, Alexandre G. de Brevern

Journal: International Journal of Molecular Sciences.

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Published: 15/05/2020

Authors: Surbhi Dhingra, Ramanathan Sowdhamini, Frédéric Cadet, Bernard Offmann

Journal: Biochimie

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Published: 03/02/2016

Authors: Tom Verhaeghe, Karel De Winter, Magali Berland, Rob De Vreese, Matthias D’hooghe, Bernard Offmann, Tom Desmet

Journal: Chemical Communications

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Published: 11/07/2013

Authors: Swapnil Mahajan, Garima Agarwal, Mohammed Iftekhar, Bernard Offmann, Alexandre G. de Brevern, Narayanaswamy Srinivasan

Journal: Journal of Biomolecular Structure and Dynamics

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Published: 03/06/2013

Authors: Swapnil Mahajan, Alexandre G. de Brevern, Bernard Offmann, Narayanaswamy Srinivasan

Journal: Journal of Biomolecular Structure and Dynamics

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Published: 07/08/2006

Authors: Manoj Tyagi, Venkataraman S. Gowri, Narayanaswamy Srinivasan, Alexandre G. de Brevern, Bernard Offmann

Journal: Proteins: Structure, Function, and Bioinformatics

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Published: 11/01/2005

Authors: Ratna Rajesh Thangudu, Arunachalam Vinayagam, Ganesan Pugalenthi, Arunachalam Manonmani, Bernard Offmann, Ramanathan Sowdhamini

Journal: Proteins: Structure, Function, and Bioinformatics

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Protein Engineering

Machine learning, epistasis, and protein engineering: From sequence-structure-function relationships to regulation of metabolic pathways

Learning Epistasis and Residue Coevolution Patterns: Current Trends and Future Perspectives for Advancing Enzyme Engineering

Learning Strategies in Protein Directed Evolution

Machine Learning Enables Selection of Epistatic Enzyme Mutants for Stability Against Unfolding and Detrimental Aggregation

Novel Descriptors and Digital Signal Processing- Based Method for Protein Sequence Activity Relationship

One‐shot Optimization of Multiple Enzyme Parameters: Tailoring Glucose Oxidase for pH and Electron Mediators

A machine learning approach for reliable prediction of amino acid interactions and its application in the directed evolution of enantioselective enzymes

Application of Fourier transform and proteochemometrics principles to protein engineering

Quantum Computing

Non-Hemolytic Peptide Classification Using A Quantum Support Vector Machine

AntiMicrobial Peptides (AMPs)

Resistance against two lytic phage variants attenuates virulence and antibiotic resistance in Pseudomonas aeruginosa

To cheat or not to cheat: cheatable and non-cheatable virulence factors in Pseudomonas aeruginosa

Protein Science

Versatile Dimerisation Process of Translocator Protein (TSPO) Revealed by an Extensive Sampling Based on a Coarse-Grained Dynamics Study

Structural variations within proteins can be as large as variations observed across their homologues

Non-Linear Dynamics Analysis of Protein Sequences. Application to CYP450

Knowledge-based prediction of protein backbone conformation using a structural alphabet

Use of a structural alphabet to find compatible folds for amino acid sequences

Analysis of loop boundaries using different local structure assignment methods

Protein short loop prediction in terms of a structural alphabet

Synthetic Biology

Non-linearity of Metabolic Pathways Critically Influences the Choice of Machine Learning Model

Identification of flux checkpoints in a metabolic pathway through white-box, grey-box and black-box modeling approaches

A Machine Learning Approach for Efficient Selection of Enzyme Concentrations and Its Application for Flux Optimization

Flux prediction using artificial neural network (ANN) for the upper part of glycolysis

Modeling of a Cell-Free Synthetic System for Biohydrogen Production

Antibodies

Quality assessment of VHH models

VHH Structural Modelling Approaches: A Critical Review

Discrete analysis of camelid variable domains: sequences, structures, and in-silico structure prediction

Physico-chemical characterization

Use of Machine learning and infrared spectra for rheological characterization and application to the apricot

PEACCEL’s founders publications

Regioselective glucosylation of (+)-catechin using a new variant of sucrose phosphorylase from Bifidobacterium adolescentis

Insights into Comparative Modeling of VHH Domains

A glance into the evolution of template-free protein structure prediction methodologies

Converting bulk sugars into prebiotics: semi-rational design of a transglucosylase with controlled selectivity

DoSA: Database of Structural Alignments

Correlation between local structural dynamics of proteins inferred from NMR ensembles and evolutionary dynamics of homologues of known structure

A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications

Native and modeled disulfide bonds in proteins: Knowledge-based approaches toward structure prediction of disulfide-rich polypeptides