Publications

A machine learning approach for reliable prediction of amino acid interactions and its application in the directed evolution of enantioselective enzymes

Published: November 13, 2018

Authors: Frédéric Cadet, Nicolas Fontaine, Guangyue Li, Joaquin Sanchis, Matthieu Ng Fuk Chong, Rudy Pandjaitan, Iyanar Vetrivel, Bernard Offmann, Manfred T. Reetz

Journal: Scientific Reports

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Application of fourier transform and proteochemometrics principles to protein engineering

Published: October 16, 2018

Authors: Frédéric Cadet, Nicolas Fontaine, Iyanar Vetrivel, Matthieu Ng Fuk Chong, Olivier Savriama, Xavier Cadet, Philippe Charton

Journal: BMC Bioinformatics

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Knowledge-based prediction of protein backbone conformation using a structural alphabet

Published: November 21, 2017

Authors: Iyanar Vetrivel, Swapnil Mahajan, Manoj Tyagi, Lionel Hoffmann, Yves-Henri Sanejouand, Narayanaswamy Srinivasan, Alexandre G. de Brevern, Frédéric Cadet, Bernard Offmann 

Journal: PLoS One

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Modeling of a Cell-Free Synthetic System for Biohydrogen Production

Published: March 30, 2015

Authors: Nicolas Fontaine, Brigitte Grondin-Perez, Frederic Cadet, Bernard Offmann 

Journal: Journal of Computer Science & Systems Biology

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Use of a structural alphabet to find compatible folds for amino acid sequences

Published: October 25, 2014

Authors: Swapnil Mahajan, Alexandre G. de Brevern, Yves-Henri Sanejouand, Narayanaswamy Srinivasan, Bernard Offmann

Journal: Protein Science

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Analysis of loop boundaries using different local structure assignment methods

Published: July 15, 2009

Authors: Manoj Tyagi, Aurélie Bornot, Bernard Offmann, Alexandre G. de Brevern 

Journal: Protein Science

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Protein short loop prediction in terms of a structural alphabet

Published: June 25, 2009

Authors: Manoj Tyagi, Aurélie Bornot, Bernard Offmann, Alexandre G. de Brevern

Journal: Computational Biology and Chemistry

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PEACCEL’s founders publications

Converting bulk sugars into prebiotics: semi-rational design of a transglucosylase with controlled selectivity

Published: February 3, 2016

Authors: Tom Verhaeghe, Karel De Winter, Magali Berland, Rob De Vreese, Matthias D’hooghe, Bernard Offmann, Tom Desmet

Journal: Chemical Communications

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DoSA: Database of Structural Alignments

Published: July 11, 2013

Authors: Swapnil Mahajan, Garima Agarwal, Mohammed Iftekhar, Bernard Offmann, Alexandre G. de Brevern, Narayanaswamy Srinivasan

Journal: Journal of Biomolecular Structure and Dynamics

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Correlation between local structural dynamics of proteins inferred from NMR ensembles and evolutionary dynamics of homologues of known structure

Published: June 3, 2013

Authors: Swapnil Mahajan, Alexandre G. de Brevern, Bernard Offmann, Narayanaswamy Srinivasan

Journal: Journal of Biomolecular Structure and Dynamics

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A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications

Published: August 7, 2006

Authors: Manoj Tyagi, Venkataraman S. Gowri, Narayanaswamy Srinivasan, Alexandre G. de Brevern, Bernard Offmann

Journal: Proteins: Structure, Function, and Bioinformatics

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Native and modeled disulfide bonds in proteins: Knowledge-based approaches toward structure prediction of disulfide-rich polypeptides

Published: January 11, 2005

Authors: Ratna Rajesh Thangudu, Arunachalam Vinayagam, Ganesan Pugalenthi, Arunachalam Manonmani, Bernard Offmann, Ramanathan Sowdhamini

Journal: Proteins: Structure, Function, and Bioinformatics

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